THE SEATH LAB
Resources
A collated list of tools for bioinformatics
01
Proteomics Tools
02
Bioinformatics Tools
https://metascape.org/gp/index.html#/main/step1 (GO analysis)
https://www.gsea-msigdb.org/gsea/index.jsp (Gene set enrichment analysis)
https://string-db.org (STRING analysis)
https://cytoscape.org/ (GO type network analysis)
http://phenome.manchester.ac.uk/subcellular/ (Cellular distribution of genes)
https://phosphomatics.com/ (phosphoproteomics)
https://portals.broadinstitute.org/gppx/crispick/public (CRISPR guides)
https://appyters.maayanlab.cloud/#/ (multifunctional set of bioinformatics pipelines)
http://www.swisstargetprediction.ch/ (ligand protein interaction predictor)
https://www.expasy.org/ (Collated bioinformatics tools)
https://www.biostars.org/ (Question forum)
03
Data Visualization
https://gehlenborglab.shinyapps.io/upsetr/ (upset plot generation)
04
Sequencing
https://mosslabtools.bb.iastate.edu/ (RNA structure)
https://genome.ucsc.edu/cgi-bin/hgCustom (Genome visualization)
https://igv.org/app/ (Genome visualization)
05